PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0172s00120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 256aa    MW: 29291.5 Da    PI: 10.0488
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0172s00120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55.1e-18641303094
                       ..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3  30 keesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       +ee+k+ ++e +      W+++++y+++s++yvltkGW+++vk+++L +gD+v F++++++ +++++
  Vang0172s00120.1  64 EEEEKEAMFEKPLTpsDCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVFFHRHRTHPQRFFI 130
                       456678888886655588**************************************87766665565 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023621.3E-1465130IPR003340B3 DNA binding domain
SuperFamilySSF1019361.14E-1480131IPR015300DNA-binding pseudobarrel domain
CDDcd100173.69E-1382123No hitNo description
Gene3DG3DSA:2.40.330.108.7E-1782138IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.2582136IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MSINHYSPEA RLYWTDQQQA STWLGNSHTP RFNLNDNQEE VDEEDEEVME KATAAGAGGE  60
AAAEEEEKEA MFEKPLTPSD CWRFRYSYWN SSQSYVLTKG WSRYVKDKRL HAGDVVFFHR  120
HRTHPQRFFI NSSRRQANPP AHVTTTATPS FYSAHPYPAH QLPFPYQPQS LHAPPGGGSQ  180
GQNQTTPGGN SSGGRVLRLF GKSRAMSKPR GWRVVMGKEK RLQPEGRFRR YRLAARAYRN  240
DHHSKGDIWT WLPKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-176913011112DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-159AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495594.11e-107PREDICTED: B3 domain-containing protein At2g36080-like
TrEMBLA0A0L9U8E11e-108A0A0L9U8E1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RZ761e-108A0A0S3RZ76_PHAAN; Uncharacterized protein
STRINGGLYMA03G35700.26e-81(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.27e-26B3 family protein